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LIGPLOT

LIGPLOT automatically generates schematic diagrams of protein-ligand interactions from the 3D coordinates in a PDB file.

Authors: Andrew C Wallace & Roman A Laskowski.

There is a local installation of the online manual.

To Get Started:

setup ligplot (or source /srv/local/setup/ligplot.set)

Your will then have the following aliases in your path: 

	alias ligplot $ligdir/ligplot.scr
	alias ligonly $ligdir/ligonly.scr
	alias dimplot $ligdir/dimplot.scr
	alias dimonly $ligdir/dimonly.scr
	alias hbplus  $hbdir/hbplus
If this is your first time using LIGPLOT, see the examples in the online manual.

To edit Ligplot output using the LigEd editor, type the following in the directory with your ligplot.drw file:

java LigEd

Note: If you publish a figure made with LIGPLOT, please cite the following:

Wallace A C, Laskowski R A & Thornton J M (1995). LIGPLOT: A program to generate schematic diagrams of protein-ligand interactions. Prot. Eng., 8, 127-134.

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Last Modified: Friday, 29-Jun-2007 14:40:02 EDT