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Last Modified: Friday, 17-Oct-2008 11:16:52 EDT
Data Reduction and Analysis Applications
ACCESS : Surface Accessibility
APROPOS : Calculate pockets on the surface of a molecule
ARP:Automated Refinement Procedure
AutoDock:Automated Docking of Flexible Lig
ands to Macromolecules
ASC: Analytic Surface Calculation
AQUA: Check Geometry in NMR Protein Structures
BABEL: File conversion
CCP4 Program Suite : Structure Refinement
CHI:Computational
searching of protein helix interactions
CNS: Crystallography and NMR System (Local Only)
COORDCOMP: All atom difference distance plot
CRITXPL: Plotting of R and Rfree,
Etot, BOND, ANGL, DIHE, VDW, NOE, etc.
CURVES: Helical Analysis of Irregular Nucleic Acids
Difference Distance
Matrix Plot : Compare C-alpha positions
DEFINE_S : Secondary Structure Analysis and Plot
DELPHI: Calculate Charge Distribution
DEMON/ANGEL: Density Modification and Averaging
DENZO : Diffraction Data Reduction
Dials and Windows : Display of DNA structure and MD simulations
DOCK: Most Favorable Ligand/Receptor Binding
DPS_GUI: Process Quantum-4 CCD Detector Data
DSSP
Program : Secondary Structure Calculation
d*TREK: Diffraction Data Reduction
FREEHELIX: Analysis of radically bent and kinked DNA
gnuplot: Function plotting program
Grace: X,Y Plotting and Regression
GVX: Greg Van Duyne's Programs
HBPLUS: Hydrogen Bond Calculation
HEAVY: Heavy Atom Search and Refinement
MATHEMATICA: Doing Mathematics by Computer
MATLAB: Alternative Doing Mathematics by Computer
MADSYS: Multi-wavelength Anomalous Diffraction Refinement
MAXSCALE : Scaling Fhkl's
MODELLER : Protein Homology and Comparative Modeling
Mosflm : Processing of rotation data collected on either image plate or film.
MSMS: Solvent Excluded Surface and Volume Calculation
MSP:
Molecular Surface Package : Surfaces and
Volumes
Newlsc
: Local Scaling Program
Developed by Alan Friedman at the Yale CSB.
NMRPipe : Fourier processing,
display and analysis of NMR spectra
NMRView : Visualization and
analysis of NMR datasets
Nuclin-Nuclsq: A rapid and
automatic online refinement tool of partial or full assemblies of
nucleic acids
OS: Occluded Surface : Packing Analysis
PATTERN: Display Diffraction Pattern
PDB Validation Suite: Validation of
3D structure data
Phaser : Maximum Likelihood Phasing
PHASES : Computing Phase Angles
PHENIX : Automated crystal structure determination
PROCHECK: Check Geometry in Crystal Protein Structures
PROCHECK-NMR: Check Geometry in NMR Protein Structures
PROFILE : Eisenberg 3D Environment Analysis
RAVE : Density Averaging
Replace: Rotational and translational searches of unit cells
RESOLVE: Maximum-likelihood density modification
SHARP: Statistical Heavy- Atom Refinement and Phasing
SHELX : Structure Refinement
SIMS: Computation of a smooth invariant molecular surface
SnB: Normalize and visualize x-ray crystal structures
SOLVE: Crystallographic structure solution for MIR and MAD
Sparky: Assign and intergrate peaks in NMR spectra
SurfVolume: Mark Gerstein's surface area and volume programs
TNT: Refinement by Least Squares Function-minimization
Uppsala Software Factory: Gerard Kleywegt's programs
VOLUME : Residue Voronoi Volumes
VNMR : NMR data acquisition, processing and display
Westhof Programs:RNA refinement and modeling package
xdlDATAMAN and xdlMAPMAN
XDS
: X-ray Detector Software for processing troublesome diffraction data
XDS (Antique version): Data Streamer for the obsolete Xentronics Area Detector
Xmgr : X, Y Plotting and Regression
Xplor : Structure Refinement
XWPL and WPLIB: Wavelet Packets Analysis
Last Modified: Friday, 17-Oct-2008 11:16:52 EDT
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