Protein, DNA and
Diffraction Databases and Servers
Anomolous Scattering Factors and
Absorption Coefficients
Local copy of Sasaki's tables
Atlas of Side-Chain and Main-Chain Hydrogen Bonding
A record of the hydrogen bonding patterns of the
standard hydrogen bonding groups
Biology
Workbench
Point and click web interface that provides access to
databases and analysis tools
Cambridge Structural Data Base
Small Molecules
CATH
Protein Structure Classification
CE
(Combinatorial Extension)
Aligns two polypeptide chains using characteristics of
their local geometry
Cis-Prolines, Cis-Peptides
and Disulfides
Lists thereof
DALI Server
Comparing protein structures in 3D
DSMP
Database
Database of Structural Motifs in Proteins
DSSP Program and Database
Secondary Structure Assignments
Entrez
Protein, Nucleotide Databases and MEDLINE subset
FSSP
Fold classification based on Structure-Structure
alignment of Proteins
Macromolecular Assemblies
Protein Quaternary Structure Database (from the EBI-MSD)
MySQL
Relational Database
HIC-Up
Hetero-Compounds - Uppsala (PDB, VRML files; X-PLOR,
TNT, O Dictionaries)
National Library of
Medicine
PubMed and other Online Information Services
NCBI
National Center for Biotechnology Information (GenBank,
BLAST, Entrez, etc.)
Nucleic Acid
Database (NBD)
Repository for the coordinates of nucleic
acid-containing crystal structure (Rutgers Univ.)
Local
OWL or WWW OWL
Composite Protein Sequence Database
Protein Data Bank
(PDB)
X-ray, NMR and Model Structures (Now the RCSB)
Protein
Information Resource (PIR)
Comprehensive, annotated, and non-redundant protein
sequence database
Protein-Protein
Interfaces
All interfaces with >9 residues interacting. (JMB paper describing this
database)
PSIpred
Protein Structure Prediction Server
PubMed
Citation Searching
Research Collaboratory
for Structural Bioinformatics (RCSB)
X-ray, NMR and Model Structures (Now the PDB)
Research Computing Group (Yale
School of Medicine)
Links to Many Databases and Analysis Tools
SgInfo
A comprehensive Collection of ANSI C Routines for the
Handling of Space Group Symmetry
Structural
Classification of Proteins (SCOP)
Families, Superfamilies and Folds
SWISS-PROT
Highly Annotated Protein Sequence Databases
VAST
NCBI's structure-structure similarity search
Yale
Library Research Work Station
Databases and Electronic Journals, etc.